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DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.
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DNA String compression example
Definition:
A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.
Assume the following binary encoding: A = 00, T= 01, C = 10, G = 11
We can fit 4 characters from a DNA string into an unsigned char.If (|d| % 4 != 0), then pad with trailing zeros. Suppose d is ATTCGG.
Compress ATTCGG using bitwise operators in C++. First print |d|.
DNA String compression example
Definition:
A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.
Assume the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Initialize an 8-bit unsigned char to store compressed bits.
DNA String compression example
Definition:
A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.
Assume the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Read the first character of d and use bitwise operators to place its binary encoding in the proper location.
DNA String compression example
Definition: A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.
Assume the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Read the next character of d and use bitwise operators to place its binary encoding in the proper location.
DNA String compression example
Definition:
A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0 |d| is the length of d.
Assume the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Read the next character of d and use bitwise operators to place its binary encoding in the proper location.
DNA String compression example
Definition:
A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.
Assme the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Read the next character of d and use bitwise operators to place its binary encoding in the proper location.
DNA String compression example
Definition: A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0.
|d| is the length of d.
Assume the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Print the base-10 integer value of the 8-bit unsigned char.
DNA String compression example
Definition: A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.
Assume the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Reinitialize the 8-bit unsigned char.
DNA String compression example
Definition:
A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0 |d| is the length of d.
Assume the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Read the next character of d and use bitwise operators to place its binary encoding in the proper location.
DNA String compression example
Definition:
A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.
Assume the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Read the next character of d and use bitwise operators to place its binary encoding in the proper location.
DNA String compression example
Definition: A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.
Assume the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Once we reach the end of d, add trailing zeros to fill the 8-bit
unsigned char.
DNA String compression example
Definition:A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.
Assume the following binary encoding:
A = 00, T= 01, C = 10, G = 11
d = ATTCGG
Print the base-10 integer value of the 8-bit unsigned char
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